Fisheries-related datasets in CRAN packages

Datasets from packages not controlled by the fishR Core Team (i.e., FSA and FSAdata) are entered manually, so please submit a GitHub Issue (see link at bottom of right sidebar menu) with any corrections or additions.

 

alr3

Dataset Description
lakemary Age and length of Bluegill from Lake Mary, MN
walleye Age and length of Walleye from Butternut Lake, WI in 3 different management periods
wblake Age and length of Smallmouth Bass from West Bearsking Lake, MN (exclude age-9 and older)
wblake2 Age and length of Smallmouth Bass from West Bearsking Lake, MN (all fish)

 

AquaticLifeHistory

Dataset Description
growth_data Length-at-age data for common blacktip sharks (Carcharhinus limbatus) from Indonesia
maturity_data Length-at-maturity and age-at-maturity data for female silky sharks (Carcharhinus falciformis) from Papua New Guinea

 

CatDyn

Dataset Description
gayhake Industrial and Artisanal Catch and Effort Data from the Chilean Hake Fishery
gayhakelm Length and Month data of Chilean hake from Artisanal Fishery
gayhakelw Length and Weight data of Chilean hake from Artisanal Fishery
lolgahi Industrial Trawling Data from the Squid Fishery of the Falkland Islands
twelver Exhaustive recorded operational activity of the Anguilla japonica sport fishery in Taiwan during the 1983-1984 season

 

COUNT

Dataset Description
fishing Site abundance and characteristics from commercial fishing

 

fishkirkko2015

Dataset Description
fishkirkkojarvi2015 Weight-length data for six freshwater species from Lake Kirkkojarvi, Finland

 

fishmethods

Dataset Description
alkdata Age-length key (summarized form) for Gulf of Hauraki snapper shown in Table 8.3 of Quinn and Deriso (1999)
bonito Growth increment data derived from tagging experiments on Pacific bonito (Sarda chiliensis)
catch Number of cod captured in 10 standardized bottom trawl hauls from Massachusetts, 1985
codcluslen Lengths of Atlantic cod caught during Massachusetts Division of Marine Fisheries bottom trawl survey, spring 1985
codstrcluslen Lengths of Atlantic cod caught during Massachusetts Division of Marine Fisheries stratified random bottom trawl survey, spring 1985
counts Run size data of alewife (Alosa pseudoharengus) in Herring River, MA from 1980-2010
cowcod Catch data (metric tons) for cowcod Sebastes levis 1900 to 2008
darter Sequence of catch data for the faintail darter from removal experiments by Mahon
Gerking Marked and released sunfish in an Indiana lake for 14 days by Gerking (1953)
goosefish The mean lengths by year and number of observations for length>=smallest length at first capture (Lc) for northern goosefish used in Gedamke and Hoenig (2006)
haddock Age, weight at spawning, partial recruitment, and fraction mature data for haddock (Melanogrammus aeglefinus) used by Gabriel et al. (1989) to calculate spawning stock biomass-per-recruit
Hightower The complete capture histories of striped bass for Lake Gaston, North Carolina
Jensen The age data are from reconstructed catches of lake whitefish reported by Jensen (1996) in Table 1 and were expanded to individual observations from the age frequency table
kappenman Pacific cod catch per effort from Table 1 in Kappenman (1999)
Kimura Length and age data for male and female Pacific Hake
lingcod Catch data (metric tons) for lingcod 1889 to 2001
maki From Table 1 of Maki et al. (2001) for 3 years combined
menhaden Age, fecundity-at-age, partial recruitment, fraction mature, and nautral mortality data for menhaden to calculate eggs-per-recruit
nshrimp Recruit and postrecruit survey indices and catch data for Gulf of Maine northern shrimp (Pandulus borealis), 1985-2007
P.donacina Growth increment data derived from a tagging experiment on Paphis donacina
pinfish Length, age and sex data for pinfish (Lagodon rhomboides) from Tampa Bay, Florida
rig Tagging growth increment data for New Zealand rig (Mustelus lenticulatus), after removal of outliers
rockbass Age data from a sample of rock bass trap-netted from Cayuga Lake, New York
sblen Total length (inches) of striped bass collected by Massachusetts volunteer anglers in 2014
sbotos Ages of striped bass interpreted from the same otolith sections by two age readers
Shepherd Seasonal length frequency data of Raja clavata
sole Flathead sole CPUEs for a side-by-side trawl calibration study of National Marine Fisheries Service (NMFS) and Alaska Department of Fish and Game (ADFG) vessels
striper Estimates of recruits and female spawning stock biomass for striped bass from the Atlantic State Marine Fisheries 2016 stock assessment
trout Release lengths, recapture lengths and times-at-large for trout in the Kenai River
wolffish Spring untransformed mean catch per tow for wolffish (Anarhichas lupus)
yellowtail Fall average catch per tow for southern New England yellowtail flounder

 

fishMod

Dataset Description
TigerFlathead Data set arising from a south-east Australia fish survey, see Bax and Williams (1999)

 

FSA

Dataset Description
BluegillJL Capture histories (2 samples) of Bluegill from Jewett Lake, MI.
BrookTroutTH Catch-at-age for Tobin Harbor, Isle Royale Brook Trout.
ChinookArg Lengths and weights for Chinook Salmon from three locations in Argentina.
CodNorwegian Stock and recruitment data for Norwegian cod, 1937-1960.
CutthroatAL Capture histories (9 samples) of Cutthroat Trout from Auke Lake.
Ecoli Population growth of Escherichia coli.
Mirex Mirex concentration, weight, capture year, and species of Lake Ontario salmon.
PikeNY Summarized multiple mark-recapture data for all Northern Pike from Buckhorn Marsh, NY.
PikeNYPartial1 Capture histories (4 samples), in capture history format, of a subset of Northern Pike from Buckhorn Marsh, NY.
PSDlit Gabelhouse five-cell length categories for various species.
SMBassLS Catch-effort data for Little Silver Lake (Ont) Smallmouth Bass.
SMBassWB Growth increment data for West Bearskin Lake, MN, Smallmouth Bass.
SpotVA1 Age and length of spot.
WhitefishLC Assigned ages from two readers on three structures for Lake Whitefish from Lake Champlain.
WR79 Ages and lengths for a hypothetical sample from Westerheim and Ricker (1979).
WSlit All known standard weight equations.

 

FSAdata

Dataset Description
AfricanRivers Characteristics of a sample of West African rivers.
AHerringChile Ages and lengths of Araucanian Herring from Chilean waters.
AlewifeLH Ages of Lake Huron Alewife assigned from otoliths and scales.
AnchovetaChile Ages and lengths of Anchoveta from Chilean waters.
BassFL Catch-at-age for Suwanee and Largemouth Bass.
BGHRfish Fish information from samples collected from Big Hill Reservoir, KS, 2014.
BGHRsample Information for each electrofishing sample from Big Hill Reservoir, KS, 2014.
BlackDrum2001 Biological data for Black Drum from Virginia waters of the Atlantic Ocean, 2001.
BloaterLH Stock and recruitment data for Lake Huron Bloaters, 1981-1996.
BlueCatfish Ages and lengths of Blue Catfish.
BlueCrab Catch and effort data for male Blue Crabs.
BluefishAge Ages of Bluefish assigned from otoliths by two readers.
BluegillIL Length-at-marking and recapture and time-at-large of Bluegill.
BluegillLM Lengths and weights for Bluegill from Lake Mary, MN.
BluntnoseIL1 Subampled lengths of Bluntnose Minnows from Inch Lake, WI.
Bonito Ages and lengths of Australian Bonito.
BrookTroutNC Stock and recruitment data for Brook Trout from Ball Creek, NC, 1991-2004.
BrookTroutNEWP Catches in removal events for Brook Trout in the Nashwaak Experimental Watersheds Project.
BrookTroutNEWP1 Catches in removal events for Brook Trout in the Nashwaak Experimental Watersheds Project.
BrookTroutOnt Summarized single mark-recapture data for Brook Trout across many years.
BrownTroutVC1 Single census mark-recapture data with lengths for Brown Trout from Valley Creek, MN.
BSkateGB Stock and recruitment data for Barndoor Skate from Georges Bank, 1966-2007.
BullTroutRML1 Lengths and weights for Bull Trout from two Rocky Mountain lakes and two eras.
BullTroutRML2 Ages and lengths of Bull Trout from two Rocky Mountain lakes at two times.
BullTroutTC Catch-at-age for Bull Trout in Trestle Creek, ID.
Cabezon Ages, lengths, and maturity for female Cabezon from Oregon.
Casselman1990 Instantaneous growth rates for two calcified ageing structures.
CCatfishNB Catch-at-age of Channel Catfish from two sections of the Platte River, NB.
ChinookKR Stock and recruitment data for Klamath River Chinook Salmon, 1979-2000.
CiscoTL Lengths, weights, and sex of Cisco from Trout Lake, WI.
CrappieARMS Stock and recruitment data for Crappies from four reservoirs in Arkansas and Mississippi, USA.
CreekChub Ages (subsample) and lengths (all fish) for Creek Chub.
CreelMN Results of a large number of creel surveys in Minnestoa lakes.
Croaker1 Ages of Atlantic Croaker assigned from otoliths by two readers.
Croaker2 Ages, lengths, and sexes of Atlantic Croaker by sex.
CutthroatALf Capture histories (9 samples) of Cutthroat Trout from Auke Lake.
DarterMahon Catch and effort data for Fantail Darter.
DarterOnt Ages and lengths of Channel Darters from two locations.
Deckeretal1999 Catches in removal events of Cutthroat Trout and Coho Salmon in Little Stawamus Creek (British Columbia, Canada) in 1997.
EuroPerchTJ Ages, lengths, and sexes of European Perch.
FHCatfish Catch-at-age of Flathead Catfish from three southeastern rivers.
FHCatfishATL Catch-at-age of Flathead Catfish from three Atlantic rivers.
FWDrumLE1 Ages and lengths of Lake Erie Freshwater Drum.
FWDrumLE2 Ages (subsample) and lengths (all fish) for Freshwater Drum from Lake Erie.
Ghats Species accumulation data for fish of the Western Ghats of India.
GreensCreekMine Catches in removal events of Coho Salmon and Dolly Varden Char at various locations near the Greens Creek (AK) Mine site.
Hake Stock and recruitment data for Hake, 1982-1996.
HalibutPAC Stock and recruitment data for Pacific Halibut, 1929-1991.
Herman Lengths for Walleye, Yellow Perch, Black Crappie, and Black Bullheads from Lake Herman, SD.
HerringBWE Stock and recruitment data for Blackwater Estuary Herring, 1962-1997.
HerringISS Stock and recruitment data for Icelandic summer spawning Herring, 1946-1996.
HumpbackWFCR Capture histories (2 sample) of Humpback Whitefish.
InchLake1 Lengths for all fish captured in Inch Lake, WI, in two years
InchLake2 Lengths and weights for fish captured in Inch Lake
JobfishSIO Catch and effort data for South Indian Ocean Jobfish.
JonesStockwell Catches in removal events of Brown and Rainbow Trout at various locations.
Jonubi1 Ages and lengths of male Jonubi.
Jonubi2 Ages (subsample) and lengths (all fish) of Jonubi.
KingCrabAK Stock and recruitment data for Red King Crab in Alaska, 1960-2004.
LakeTroutALTER Biological data for Lake Trout from the Arctic LTER (AK).
LakeTroutEggs Length and egg deposition of Lake Superior Lake Trout.
LakeTroutGIS Stock and recruitment data for Lake Trout from Gull Island Shoal, Lake Superior, 1964-1991.
LakeTroutMI Stock and recruitment data for Lake Trout in Lake Superior, 1971-1991.
Lizardfish Stock and recruitment data for Greater Lizardfish, 1955-1964.
LJCisco Ages and lengths of Longjaw Cisco from two locations in Lake Michigan.
LMBassBL Lengths for Largemouth Bass from Boomer Lake, OK.
LMBassLCB Lengths for Largemouth Bass from Lake Carl Blackwell, OK.
LobsterHI Catch and effort data for Hawaiian Islands Slipper Lobster.
LobsterPEI Catch and effort data for Prince Edward Island Lobster.
Menhaden1 Catch-at-age for Gulf Menhaden, 1964-2004.
Morwong1 Ages of Morwong assigned from otoliths by Reader A at two times.
Morwong2 Ages of Morwong assigned from otoliths by Reader B at two times.
Morwong3 Ages of Morwong assigned from otoliths by two readers.
Morwong4 Ages and lengths of Morwong.
Morwong4a Ages (subsample) and lengths (all fish) for Morwong from Morwong4.
Mosquitofish Ages and lengths of Eastern Mosquitofish from ten locations from southern France to southern Spain.
MulletBS Ages of Red Mullet assigned from whole and broken-burnt otoliths.
MuskieSLR Ages of Muskellunge assigned from scales and cleithra.
MuskieWI06MR Summarized mark-recapture data for Muskellunge from many Wisconsin Lakes, 2006.
Pallid Lengths and weights for Pallid Sturgeon from four locations in the Missouri River.
Pathfinder Catch and effort for three Snapper species in a depletion experiment.
PikeHL Capture histories (2 samples) of Northern Pike from Harding Lake.
PikeIL Catch and effort data for Northern Pike from Island Lake, NB.
PikeNYPartial2 Capture histories (4 samples) of a subset of Northern Pike from Buckthorn Marsh.
PikeWindermere Stock and recruitment data for Northern Pike from Lake Windermere, 1944-1981.
PSalmonAK Stock and recruitment data for Alaskan Pink Salmon, 1960-1990.
PygmyWFBC Biological data for Pygmy Whitefish from Dina Lake #1 (British Columbia), 2000 and 2001.
RBSmeltErie Recruitment time-series for Rainbow Smelt in Lake Erie, 1977-1996.
RBSmeltLM Lengths for Rainbow Smelt from Lake Michigan, 1977.
RBTroutKenai Length-at-marking and recapture and time-at-large of Rainbow Trout.
RBTroutUNSP Capture histories (2 sample) of Rainbow Trout.
RedDrum Ages and lengths for Red Drum from the Atlantic Coast.
Riffleshell Summarized multiple mark-recapture data for Tan Riffleshell.
RockBassCL Catch-at-age of Cayuga Lake Rock Bass.
RockBassLO1 Ages and lengths of Lake Ontario Rock Bass.
RockBassLO2 Ages (subsample) and lengths (all fish) for Rock Bass from Lake Ontario.
RuffeSLRH92 Biological data for Ruffe captured from the St. Louis River in 1992.
RuffeTL89 Lengths of Ruffe captured from the St. Louis River in July, 1989.
RWhitefishAI Ages and lengths of Round Whitefish.
RWhitefishIR Ages and lengths of Round Whitefish.
SalmonADP Catches in removal events of salmon parr.
SalmonidsMCCA Catches in removal events of Cutthroate Trout and Steelhead of various sizes in two reaches of McGarvey Creek (CA).
SardineChile Ages and lengths of two year-classes of Sardine from Chilean waters.
SardineLK Ages and lengths of larval Lake Tanganyika Sardine.
SardinesPacific Stock and recruitment data for Pacific Sardines, 1935-1990.
SculpinALTER Biological data for Slimy Sculpin from the Arctic LTER (AK).
ShadCR Ages of American Shad assigned from scales by three readers at two times.
ShrimpGuam Catch and effort data for Deepwater Caridean Shrimp.
SimonsonLyons Catches in removal events of trout at various locations.
SiscowetMI2004 Ages (subsample) and lengths (all fish) for male and female Siscowet Lake Trout captured at four locations in Michigan waters of Lake Superior.
SLampreyGL Stock and recruitment data for Sea Lamprey in the Great Lakes, 1997-2007.
Snapper Lengths for Snapper from Australia.
SnapperHG1 Age (subsample) and length (all fish) of Snapper from two survey locations.
SnapperHG2 Ages (subsample) and lengths (all fish) for Snapper.
SockeyeKL Stock and recruitment data for Sockeye Salmon from Karluk Lake, AK, 1921-1948.
SockeyeSR Stock and recruitment data for Skeena River Sockeye Salmon, 1940-1967.
SpottedSucker1 Ages and lengths of Spotted Sucker.
SpotVA2 Ages (subsample) and lengths (all fish) for Spot.
StripedBass1 Ages of Striped Bass assigned from scales and otoliths.
StripedBass2 Ages and lengths of Atlantic Ocean Striped Bass.
StripedBass3 Ages (subsample) and lengths (all fish) for Striped Bass.
StripedBass4 Ages of Striped Bass assigned from scales by two readers.
StripedBass5 Ages of Striped Bass assigned from otoliths by two readers.
StripedBass6 Ages of Striped Bass assigned from scales and otoliths.
SturgeonBL Summarized multiple mark-recapture data for Lake Sturgeon.
SturgeonGB Capture years and ages for Lake Sturgeon from Goulais Bay, Lake Superior, Ont.
SunfishIN Summarized multiple mark-recapture data for Redear Sunfish.
SunfishLP Catch-at-age for Bluegill and Redear Sunfish in Florida.
TPrawnsEG Stock and recruitment data for Exmouth Gulf Tiger Prawn, 1970-83.
TroutADP Catches in removal events of trout.
TroutBR Ages and lengths of migratory Brown and Rainbow Trout.
TroutperchLM1 Ages, lengths, and sexes of Troutperch.
TroutperchLM2 Lengths for Troutperch from Lake Michigan, 1977.
TroutperchLM3 Subsampled lengths of Troutperch from Lake Michigan, 1977.
VendaceLP Stock and recruitment data for Vendace from Lake Puulavesi, 1982-1996.
VendaceLP2 Stock and recruitment data for Vendace from Lake Pyhajarvi.
WalleyeEL Stock and recruitment data for Walleye from Escanaba Lake, WI, 1958-1992.
WalleyeErie Recruitment time-series for Walleye in Lake Erie, 1959-1972.
WalleyeErie2 Biological data for Walleye from Lake Erie, 2003-2014.
WalleyeKS Catch-at-age for Walleye from eight Kansas reservoirs.
WalleyeML Back-calculated lengths-at-age for Walleye from Lake Mille Lacs, 2000-2011.
WalleyeMN06a Catch-at-age for Walleye.
WalleyeMN06b Summarized multiple mark-recapture data for Walleye from four lakes in Northern Minnesota.
WalleyePL Summarized multiple mark-recapture data for YOY walleye.
WalleyePS Ages of Walleye assigned from otoliths, scales, and spines.
WalleyeRL Growth increment data for Red Lakes Walleye.
WalleyeWad Catches-at-age for male and female Walleye from Lake Winnebago, WI, 2010.
WalleyeWyrlng Annual catches of yearling Walleye in bottom trawls from Lake Winnebago, WI, 1986-2010.
WhitefishGSL Catch-at-age of Great Slave Lake Whitefish (commercial) by area.
WhitefishLS Landings and value of Lake Superior Lake Whitefish.
WhitefishMB Ages of Lake Whitefish from four lakes assigned from scales and fin-rays.
WhitefishTB Stock and recruitment data for Lake Whitefish in Thunder Bay, Lake Superior, 1975-1988.
WhiteGrunt1 Catch-at-age for White Grunt.
WhiteGrunt2 Ages, lengths, and sexes of White Grunt.
WShrimpGA Stock and recruitment data for White Shrimp off the coast of Georgia (USA), 1979-2000.
YERockfish Ages, lengths, and maturity for Yelloweye Rockfish.
YPerchCB1 Catch-at-age for Yellow Perch from Chequamegon Bay, Lake Superior.
YPerchCB2 Stock and recruitment data for Yellow Perch in Chequamegon Bay, 1975-1986.
YPerchGB Recruitment time-series for Yellow Perch in Green Bay, 1978-1992.
YPerchGL Lengths and weights of Yellow Perch from Grafton Lake (ME) by year.
YPerchRL Recruitment time-series for Yellow Perch in Red Lakes, MN, 1942-1960.
YPerchSB Stock and recruitment data for Yellow Perch from South Bay, Lake Huron, 1950-1983.
YPerchSB1 Lengths for Yellow Perch from two locations in Saginaw Bay, Lake Michigan.
YPerchTL Lengths and weights for Yellow Perch from Trout Lake, WI.
YTFlounder Ages of Yellowtail Flounder assigned from scales and otoliths.

 

MQMF

Dataset Description
abdat Catch data for the Tasmanian abalone fishery
blackisland Length from tagging data for blacklip abalone at the Black Island site, Tasmania
dataspm Catch data for Pink Ling
LatA Simulated age data for redfish from eastern Australia in the 1990s
minnow Weekly length measurements of a minnow for use with seasonal growth curves
npf Catch data (year, biomass, effort) for several species in the Australian Northern Prawn Fishery
pttuna Yellowfin tuna fishery data (catch effort by year) from Pella-Tomlinson 1969
schaef Yellowfin tuna fishery data (catch effort by year) from Schaefer 1957
tasab Maturity and length data for Blacklip Abalone from Tasmania
tigers Prawn recruitment data from Penn and Caputi (1986)

 

Stat2Data

Dataset Description
FishEggs Percent dry mass of eggs, age, and month for Lake Ontario Lake Trout

 

TropFishR

Dataset Description
alba Length-frequency data of the clam Abra alba as presented by Brey et al. (1988)
bream Data of a covered codend experimental catch of the species Threadfin bream (Nemipterus japonicus) in South China Sea
emperor Information about sky emperor (Lethrinus mahsena) and its fisheries of offshore Mauritius banks (Nazareth banks). It can be used for production models
gillnet Data of an experiment with several gillnets with different mesh sizes
goatfish Data of Yellowstriped goatfish (Upeneus vittatus) from Manila Bay, Philippines. Can be used for the estimation of the instantaneous mortality rate (Z)
haddock Data of a covered codend experimental catch of the haddock (Melanogrammus aeglefinus)
hake Length-frequency data and biological characteristics about hake (Merluccius merluccius) and its fisheries off Senegal
trammelnet Data of an experiment with several trammel nets with different mesh sizes
trawl_fishery_java Times series of catch and effort data from the trawl fishery off the North coast of Java
whiting Dataset of North Sea whiting Merlangius merlangus caught during the period 1974-1980