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Changelog

Source: NEWS.md

FSAdata 0.4.1

  • Fixed FSAdata-package \alias problem using the “manual approach” (i.e., adding a specific @aliases FSAdata-package line to FSAdata.R) suggested in an e-mail from Kurt Hornik on 19-Aug-2023.
  • Changed all http://derekogle.com/ URLs to https://derekogle.com/.
  • Updated CITATION file to meet CRAN requirements.

FSAdata 0.4.0

CRAN release: 2022-12-11

  • Changed my (DHO) email in DESCRIPTION.
  • Added Code of Conduct
  • Updated README.md
  • Updated R-CMD-check.yaml GitHub action to v2 (this addresses the issue with the action on Ubuntu-dev).
  • Added pkgdown site.
    • Added Suggests for dplyr, fishmethods, FSA, knitr, pkgdown, readxl, and rmarkdown (related to creating website).
    • Added pkgdown.yaml GitHub action.
    • Added “CSV file” links for all datasets’ documentation files.
  • SpotVA2: Modified documentation to address #8

FSAdata 0.3.9

CRAN release: 2022-02-13

  • Last version maintained by Derek Ogle. Transferring to fishR Core Team for next version.
  • Removed Travis-CI.
  • Added GitHub Actions for CI/CD (used usethis::use_github_action_check_standard())
  • Renamed default repo from master to main (see this).

FSAdata 0.3.8

CRAN release: 2019-05-18

  • Corrected misuse of \concept in Rd files per CRAN request.

FSAdata 0.3.7

CRAN release: 2019-03-24

  • Added Encoding: UTF-8 to DESCRIPTION.
  • PygmyWFBC: Modified. Added the 2000 data (thought they were there but they were not).
  • RBTroutKenai: Modified. Corrected error (thanks to Robert Black).

FSAdata 0.3.6

CRAN release: 2017-03-10

  • BluegillIL: Modified. Changed names of variables.

FSAdata 0.3.5

CRAN release: 2016-12-13

  • .onAttach(): Modified. Streamlined package startup message.
  • Mosquitofish: Fixed small typos in documentation.

FSAdata 0.3.4

CRAN release: 2016-08-23

  • BluegillIL: Added.
  • Cabezon: Fixed small typo in documentation.
  • RBTroutKenai: Fixed small typo in documentation.
  • RuffeSLRH92: Added more specificity to documentation.
  • WalleyeErie2: Fixed small typo in documentation.
  • WalleyeML: Fixed small typo in documentation.
  • YERockfish: Fixed small typo in documentation.

FSAdata 0.3.3

CRAN release: 2016-07-18

  • Started using ROxygen v5.0.0.
  • Bonito: Added.
  • Mosquitofish: Added.
  • RWhitefishAI: Modified. Fixed typo in scientific names and length units. Fixes #3. Thanks to Peter Mous.
  • RWhitefishIR: Modified. Fixed typo in scientific names and length units. Fixes #3. Thanks to Peter Mous.
  • SnapperHG: Modified. Fixed typo in documentation.
  • StripedBass2: Modified. Fixed typo in length units. Fixes #4. Thanks to Peter Mous.
  • YPerchTL: Modified. Minor update to documentation.
  • YPerchSB1: Modified. Fixed typo in documentation.

FSAdata 0.3.2

CRAN release: 2015-10-22

  • Fixed LaTeX quotes in DESCRIPTION file.
  • Removed all \href{}{} and \url{} codes to websites that I don’t control. The addresses are now “naked” such that the user will need to copy-and-paste them into a browser to view the web page rather than clicking on a hyper link. Hopefully this will eliminate problems with R CMD CHECK.
  • Added notes to all files that were used in IFAR.

FSAdata 0.3.1

  • DATE: 21-Oct-15
  • Removed Imports for utils due to changes in FSAdata described below.
  • Lots of editorial changes to help pages to make it the datalist vignette in FSA work better an to make the documentation more consistent.
  • Changed all files in data-raw to CSV files.
  • Added and exported the FSAdataTopics object.
  • AfricanRivers: Added a topic to help documentation.
  • BGHRfish: Added.
  • BGHRsample: Added.
  • BlackDrum2001: Added.
  • Casselman1990: Added a topic to help documentation.
  • CCatfishNB: Added.
  • CreekChub: Added.
  • CreelMN: Added a topic to help documentation.
  • CutthroatALf: Modified. Removed href as it seemed inconsistent.
  • FSAdata: Modified. Fixed link to FSA package. Removed importFrom for read.table() from utils.
  • Ghats: Added a topic to help documentation.
  • LakeTroutEggs: Added a topic to help documentation.
  • PikeHL: Modified. Removed href as it seemed inconsistent.
  • ShadCR: Added.
  • SiscowetMI2004: Added.
  • StrugeonBG: Added.
  • WalleyeWad: Added.
  • WalleyeWyrlng: Added.
  • WhitefishLS: Added a topic to help documentation.

FSAdata 0.3.0

CRAN release: 2015-10-06

  • Released to CRAN

FSAdata 0.2.2

  • DATE: Oct15
  • Converted all .txt files to .Rda files. Original .txt files are in the data-raw directory which was added to .Rbuildignore.

FSAdata 0.2.1

  • DATE: Sep15
  • Updated README.md and DESCRIPTION to reflect the new websites.

FSAdata 0.2.0

  • DATE: Aug15
  • Added importFrom for utils.
  • BluegilLM: Added. Moved from FSA.
  • CutthroatALF.R: Modified. Changed to use utils::read.table() rather than read.table().
  • WalleyeErie2: Added.
  • WalleyeML: Added.

FSAdata 0.1.9

  • DATE: Jul15
  • Removed several URLs that either did not work consistently or have been moved. Fixed several others.
  • Fixed title in DESCRIPTION.
  • Fixed CITATION.
  • Removed Suggests for FSA.
  • Added Travis CI.

FSAdata 0.1.8

FSAdata 0.1.7

  • DATE: Aug14
  • Modified two examples to use interactive() because of use of FSA package.
  • BrookTroutNEWP1: Added. Use as an example to test removal() in the FSA package.
  • DarterMahon: Added.
  • LobsterPEI: Added. Used as an example to test depletion() in the FSA package.
  • ShrimpGuam: Added.
  • SnapperHG1: Added.

FSAdata 0.1.6

  • DATE: Jul14
  • BullTroutRML1: Modified. Updated the source reference.
  • BullTroutRML2: Modified. Updated the source reference.
  • CutthroatALf: Added.
  • RuffeSLRH92: Modified. Changed the species variable to indiv.
  • SunfishIn: Modified. Updated example after changes to mrClosed() in FSA.
  • WalleyeConsumption: Modified. Updated the source reference.

FSAdata 0.1.5

  • DATE: Jun14
  • Changed to using github and compiling under R 3.1.0.
  • Moved FSA to a “suggests” rather than “depends”.
  • Made topic sections consistent, added concept fields, and cleaned up titles in the help files so that help.search() worked better.
  • Cleaned up help files (consistent spacing and labeling).
  • FSAdata.R: Modified. Updated help.search() hints to include the FSA package.
  • AlewifeLH: Modified. Changed example to use xtabs(). Cleaned up help file. Added link to reference.
  • BluegillWS: Deleted. Moved to FSAWs.
  • BluefishAge: Modified. Corrected reference. Cleaned up help file.
  • Cabezon: Modified. Changed example to use xtabs(). Cleaned up help file.
  • ChinookArg: Removed (moved to FSA).
  • CreelMN: Modified. Used a dontrun{} in the examples to remove dependency on FSA. Changed example to use xtabs(). Cleaned up help file.
  • Croaker1: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
  • Croaker2: Modified. Corrected reference. Cleaned up help file.
  • GreensCreekMine: Added.
  • Herman: Modified. Modified a link to the article in the help file. Cleaned up help file.
  • JobfishSIO: Modified. Added a link to the article in the help file. Cleaned up help file.
  • LakeTroutALTER: Modified. Corrected reference. Cleaned up help file.
  • Morwong1: Modified. Changed example to use xtabs(). Cleaned up help file.
  • Morwong2: Modified. Changed example to use xtabs(). Cleaned up help file.
  • MulletBS: Modified. Changed example to use xtabs(). Cleaned up help file.
  • MuskieSLR: Modified. Changed example to use xtabs(). Cleaned up help file.
  • PikeHL: Modified. Added a note. Cleaned up help file.
  • RuffeSLRH92: Modified. Changed example to use xtabs(). Cleaned up help file.
  • RWhitefishAI: Added.
  • RWhitefishIR: Added.
  • SalmonidsMCCA: Added.
  • SardineLK: Modified. Corrected reference. Cleaned up help file.
  • SculpinALTER: Modified. Corrected reference. Cleaned up help file.
  • SnapperHG1: Added.
  • SpottedSucker1: Added.
  • SpotVA2: Modified. Corrected reference. Cleaned up help file.
  • StripedBass1: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
  • StripedBass2: Modified. Corrected reference. Cleaned up help file.
  • StripedBass3: Modified. Corrected reference. Cleaned up help file.
  • StripedBass4: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
  • StripedBass5: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
  • StripedBass6: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
  • SunfishIN: Modified. Corrected a data entry error. Added test example. Cleaned up help file.
  • WalleyeMN06a: Modified. Added link to reference. Cleaned up help file.
  • WalleyeMN06b: Modified. Added link to reference. Cleaned up help file.
  • WalleyePL: Added.
  • WalleyePL1: Deleted. Combined to form WalleyePL.
  • WalleyePL2: Deleted. Combined to form WalleyePL.
  • WalleyePL3: Deleted. Combined to form WalleyePL.
  • WalleyePL4: Deleted. Combined to form WalleyePL.
  • WalleyeWS: Deleted. Moved to FSAWs.
  • WhitefishLS: Modified. Corrected reference. Cleaned up help file.
  • YPerchTL: Modified. Corrected reference. Cleaned up help file.

FSAdata 0.1.4

  • DATE: Apr14

  • Changed R dependency to >3.0.0 (because FSA package has that dependency).

  • Removed dependency on gdata (no longer needed when RuffeWS was moved to FSA).

  • Slight modifications to RD files (capitalized all common names per new AFS “rule”, formatted around variables and topics to make easier to edit.)

  • BluefishAge: Modified. Removed link to original source (caused problems at check).

  • CrappieARMS: Modified.

  • Croaker1: Modified. Removed link to original source (caused problems at check).

  • Croaker2: Modified. Removed link to original source (caused problems at check).

  • Deckeretal1999: Added.

  • HumpbackWFCR: Added.

  • Menhaden1: Added.

  • StripedBass1: Added (from FSA).

  • StripedBass2: Modified. Removed link to original source (caused problems at check).

  • StripedBass4: Modified. Removed link to original source (caused problems at check).

  • StripedBass5: Modified. Removed link to original source (caused problems at check).

  • StripedBass6: Modified. Removed link to original source (caused problems at check).

  • WalleyeKS: Added.

FSAdata 0.1.3

  • DATE: Jun13

  • Switched to using roxygen2 to create help files.

  • Added a Depends on FSA (note that FSA no longer depends on FSAdata).

  • Modified depends to >R2.14.0 to match FSA (which this depens on).

  • Moved the following data files to FSA: BluegillJL, BluegillLM, BrookTroutTH, CodNorwegian, CutthroatAL, Ecoli, KS2D_NR, LMBassWs, Mirex, PikeNY, PikeNYPartial1, RSDlit, RuffeWs, SMBassLS, SMBassWB, SpotVA1, StripedBass1, VBGMlit, WalleyeGerowLW, WR79, and WSlit, which eliminated the dependency of FSA on FSAdata.

  • .onAttach(): added, was.onLoad()` with a slight modification to avoid possible warnings on RCMD Check.

  • .onLoad(): deleted, changed to .onAttach().

  • CreelMN: modified examples in help file to reflect dependency on FSA.

  • InchLake2: modified by changing “Largemouth Bass (<8)” to “Largemouth Bass” and “Yellow Perch (<5)” to “Yellow Perch”. Also removed the sex and mat variables.

  • PikeHL: modified by adding URL to the source report.

FSAdata 0.1.2

  • DATE: 25Nov12

  • Deleted Depends on utils package (wasn’t needed).

  • Switched to using Project development in RStudio.

  • Switched to using semantic versioning for version numbers (which means that the hyphen before the last number in the version is replaced with a period).

  • Ecoli: Added (from NCStats).

  • Mirex: Added (from NCStats).

FSAdata 0.1-1

  • DATE: 20Nov12

  • Added a namespace (for 2.14.0 compatability)

  • Switched to compiling under R version 2.13.1 (32-bit).

  • Changed license specification from “GPL version 2 or newer” to “GPL (>= 2)” to avoid warning on check.

  • .onLoad(): Modified. Moved the startup message into packageStartupMessage() in hopes of eliminating the warning when checking the package.

  • AnchovetaChile: Modified. Updated to the actual data from the author.

  • Cabezon: Added. This is the actual data from the author.

  • ChinookArg: Added.

  • CreelMN: Added.

  • KS2D_NR: Added from NCStats.

  • SardineChile: Added. This is the actual data from the author.

  • YERockfish: Added. This is the actual data from the author.

FSAdata 0.1-0

  • DATE: 19Aug11

  • Moved to compiling under 2.13.0 (32 bit)

  • Changed dependency to >2.11.1

  • Modified description file to show my e-mail address.

  • SquareLakePopn: removed. Moved to NCStats package.

  • VBGMlit: modified. Changed “to” variable to “t0”.

FSAdata 0.0-9

  • DATE: 31Jan11

  • added examples to each rd file. The examples show the structure and first few rows of each data file. In addition, many provide a simple plot or table of the raw data. The idea was to provide the user with a quick method to see what the data looked like.

  • .First.lib(): modified – Changed to include version number of loaded version.

  • BassFL: modified – corrected misspelling of SantaFe in first few rows.

  • BSkateGB: added – used for stock-recruitment analysis.

  • BrookTroutNC: added – used for stock-recruitment analysis.

  • DarterOnt: added – used for growth modeling.

  • FSAdata-package.Rd: modified – added directions on how to use help.search() to find data frames that can be used for specific concepts/topics.

  • KingCrabAK: added – used for stock-recruitment analysis.

  • SimonsonLyons: added – used for removal estimates.

  • SLampreyGL: added – used for stock-recruit relationships.

  • VendaceLP2: added – used for stock-recruit relationships.

  • YPerchCB1: added – used for catch-curve analysis.

  • YPerchCB2: modified – added a year-class variable and changed the recruit variable to recruits (notice the s).

FSAdata 0.0-8

  • DATE: 31Jul10

  • moved to compiling under 2.11.1.

  • BassFL: added – used for catch curve analysis.

  • BrookTroutOnt: added – used for Petersen mark-recapture analysis.

  • ChinookKR: added – used for stock-recruitment.

  • Hake: added – used for stock-recruitment.

  • HerringBWE: added – used for stock-recruitment.

  • LakeTroutGIS: modified – changed “recruit” variable to “recruits”.

  • PSalmonAK: added – used for stock-recruitment analysis.

  • RedDrum: added – used for von Bertalanffy models (including double von B).

  • SockeyeSR: added – used for stock-recruitment.

  • TPrawnsEG: added – used for stock-recruitment.

  • WalleyeMN06a: added – used for catch curve analysis.

  • WalleyeMN06b: added – used for multiple closed mark-recapture analysis.

  • WhiteGrunt1: added – used for catch curve analysis.

  • WhiteGrunt2: added – used for von Bertalanffy models.

FSAdata 0.0-7

  • DATE: 5Jun10
  • AHerringChile: added – used as an example for seasonal von Bertalanffy models.
  • AnchovetaChile: added – used as an example for seasonal von Bertalanffy models.
  • WAEConsumption: added – used as an example for non-linear models.

FSAdata 0.0-6

  • DATE: 17Dec09

  • moved to compiling under 2.10.1.

  • updated FSAdata.rd

  • RBTroutKenai: added – used for Fabens method example.

FSAdata 0.0-5

  • DATE: 1Apr09

  • added dependency to gdata for example in RuffeWs.

  • modified all .Rdata data files to be .txt data files.

  • changed to compiling under 2.7.0.

  • added CITATION file.

  • .First.lib: Added

  • BluegillIL1, LMBassIL1: deleted and replaced with InchLake.

  • InchLake1: Added – replaces old BluegillIL1 and LMBassIL1 and includes 2008 data.

  • InchLake2: Added – can be used for length weight and relative weight analyses.

  • MuskieWI06MR: Added – can be used for Petersen mark-recapture analyses.

  • RuffeWs: Added – can be used for standard and relative weight analyses.

  • WalleyeGerowLW: Added – can be used for standard and relative weight analyses. Specifically used to test results of emp() function in FSA against Gerow’s Excel Tool.

FSAdata 0.0-4

  • DATE: 15May08
  • moved to RForge.
  • BluegillLM1: Added – can be used for length-weight analysis.
  • BrownTroutVC1: Added – can be used for M/R by length-class.
  • RSDlit: Changed .E variables to .in and changed .m variables to .cm. This better reflects the units of measurement.
  • StripedBass2, StripedBass3: Added – can be used for growth modeling and age-length key.
  • StipedBass4, StripedBass5, StripedBass6: Added – can be used for age comparison (bias and precision) analyses.

FSAdata 0.0-3

  • DATE: unknown

  • changed to compiling under R 2.6.1.

  • redid nearly all RD files for (1) consistency, (2) to make LaTeX work, and (3) added concept and topics sections for search purposes.

  • BloaterLH: changed variable Year to year (note lower-case y).

  • BluegillWs: Added – can be used to test the rlp() function in the FSA package.

  • BrkTrtTH: Changed name to BrookTroutTH.

  • BrookTroutNEWP: Added – can be used for removal estimates.

  • BullTroutRML1: Added – can be use for length-weight analysis.

  • BullTroutRML2: Added – can be use for size-at-age growth modeling.

  • HardingLakeNP: changed name to PikeHL (consistent with other namings).

  • JonesStockwell: Added – can be used for removal estimates.

  • LMBassWs: Added – can be used to test the rlp() function in the FSA package.

  • LizardFish: changed name to Lizardfish (note lower-case f).

  • Muskie1: changed name to MuskieSLR.

  • PacFlounder: changed name to HalibutPAC.

  • PikeIL: Added – can be used for depletion estimates.

  • SalmonAPD: Added – can be used for depletion/removal estimates.

  • SardineKL: Added – can be used for size-at-age growth modeling.

  • SockeyeKL: changed variable Year to year (note lower-case y).

  • TroutAPD: Added – can be used for depletion/removal estimates.

  • WalleyeWs: Added – can be used to test the rlp() function in the FSA package.

  • WSlit: added information for bridgelip and largescale suckers.

FSAdata 0.0-2

  • DATE: unknown
  • added BullTroutTC – can be used for catch curve mortality estimation.
  • added FlatheadATL – can be used for catch curve mortality estimation.
  • added SunfishLP – can be used for catch curve mortality estimation.
  • added WalleyePS – can be used for age bias and precision estimation.